Hindbrain maturation

pathway activity — cross-omics
GO:0021578Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Hindbrain maturation pathway is significantly associated with the RNA expression of multiple genes, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NPR3, INHBA, and FAM222A, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACNPR3 →-1.341-0.813<.001<.00134
GBMINHBA →-0.764-0.481.004.00834
BRCAFAM222A →+0.846+0.745.001<.00134
BRCARERE →+0.462+0.718.002<.00134
BRCATMEM200A →-0.570-0.593.002.00334
HNSCDHDDS-AS1 →+0.395+0.490.004.00434
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration