Rhombomere development

pathway activity — cross-omics
GO:0021546Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Rhombomere development pathway is significantly associated with the protein abundance of multiple proteins, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SFRP2, DDX18, and SFRP4, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADSFRP2 →+0.963+0.065<.001<.00137
LSCCDDX18 →-0.457-0.102<.001<.00137
COADSFRP4 →+0.931+0.080<.001<.00136
LSCCCEBPZ_S629 →-0.426-0.087.001.00136
COADMRPL34 →-0.313-0.069.002.00136
PDACPOFUT1 →+0.214+0.074.002<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration