Obsolete cyclic-nucleotide-mediated signaling

pathway activity — cross-omics
GO:0019935Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete cyclic-nucleotide-mediated signaling pathway is significantly associated with the RNA expression of multiple genes, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NOL8, PRKG1, and HTR2A, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACNOL8 →-0.261-0.721.008<.00137
LSCCPRKG1 →+0.712+0.688<.001<.00136
GBMHTR2A →+1.035+0.737<.001.00236
LSCCASPA →+0.347+0.621<.001<.00136
OVANK2 →+0.793+0.364.001.00835
LSCCCADM3-AS1 →+0.457+0.807<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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