Neuronal action potential propagation

pathway activity — cross-omics
GO:0019227Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Neuronal action potential propagation pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CT66, CNTN5, and NPM2, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCCT66 →+0.476+0.406.002<.00134
HNSCCNTN5 →+0.547+0.298.001.00234
GBMNPM2 →+0.842+0.676.001.00134
HNSCNTS →+1.708+0.354.006.00434
GBMNRIP3 →+0.878+0.850<.001<.00134
BRCAPCLO →+0.956+0.736.006.00934
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration