Obsolete histone methylation

pathway activity — cross-omics
GO:0016571Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone methylation pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are HNRNPR, HNRNPU, and MICALL1, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMHNRNPR →+0.199+0.034.003.00237
HNSCHNRNPU →+0.231+0.091.001<.00137
GBMMICALL1 →-0.360-0.055.001<.00137
HNSCADNP →+0.242+0.072<.001<.00137
COADTNKS1BP1_S882 →-0.485-0.051.004.00436
COADWDR5 →+0.208+0.057.002.00227
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration