Obsolete histone modification

pathway activity — cross-omics
GO:0016570Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone modification pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are JPH2, HSPB7, and MYL9, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVJPH2 →-0.932-0.974<.001.00333
OVHSPB7 →-1.839-1.541<.001.00633
OVMYL9 →-1.136-0.871.005.00932
OVPDGFRL →-2.325-1.463<.001.00132
OVCOMP →-2.480-0.944.001.00432
OVFKBP14 →-1.298-0.965<.001.00332
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration