Regulation of striated muscle tissue development

Across TCGA patient cohorts, RNA activity of the Regulation of striated muscle tissue development pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are JPH2, LZTS3, and GRIA3, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of striated muscle tissue development activity versus JPH2 in COAD (Pearson r = 0.09).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	JPH2 →	+1.045	+0.694	<.001	.003	3	4
OV	LZTS3 →	-0.856	-0.587	.006	.008	3	3
GBM	GRIA3 →	-0.603	-0.613	.009	.001	3	3
COAD	SCG2 →	+1.021	+0.537	<.001	<.001	3	3
GBM	NCF4 →	+0.784	+0.743	.004	.002	3	3
COAD	HACD1 →	+0.669	+0.642	.001	.007	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0016202 vs JPH2 — COAD

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