Regulation of striated muscle tissue development

Across TCGA cell cohorts, RNA activity of the Regulation of striated muscle tissue development pathway is significantly associated with the RNA expression of multiple genes, with the LARGE_INTESTINE cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are KLLN, PREX1, and TIMM10B, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, KLLN grouped by Regulation of striated muscle tissue development-low versus -high activity in LARGE_INTESTINE.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LARGE_INTESTINE	KLLN →	+0.477	+0.373	<.001	<.001	3	4
LIVER	PREX1 →	-2.077	-0.286	.001	.002	3	4
BONE	TIMM10B →	-0.819	-0.310	.005	.003	3	4
SOFT_TISSUE	NET1 →	+1.728	+0.305	.002	.004	3	4
UPPER_AERODIGESTIVE_TRACT	DEGS2 →	+0.454	+0.301	<.001	<.001	3	3
UPPER_AERODIGESTIVE_TRACT	LRRC8C →	-2.231	-0.396	.001	.002	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

KLLN by Regulation of striated muscle tissue development activity — LARGE_INTESTINE

Explore this box plot interactively →