Neuroblast differentiation

pathway activity — cross-omics
GO:0014016Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Neuroblast differentiation pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are FAP, SPARC, and ISLR, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCFAP →+1.596+0.953.001.00535
HNSCSPARC →+0.800+0.459.005.00135
CCRCCISLR →+2.524+1.108<.001<.00134
CCRCCCOL3A1 →+2.280+1.255<.001<.00134
BRCAHOPX →+0.548+0.601.009.00434
CCRCCPEAK1 →+0.712+1.083.009<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration