Negative regulation of transcription by competitive promoter binding

pathway activity — cross-omics
GO:0010944Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Negative regulation of transcription by competitive promoter binding pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NUP160, TXNP6, and DCAF13P3, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCANUP160 →+0.457+0.269.008<.00134
GBMTXNP6 →+0.520+0.486<.001<.00134
PDACDCAF13P3 →+0.227+0.235.001.00134
UCECZNF232 →+0.565+0.256.005.00334
UCECMOCS1 →+0.548+0.312.009.00533
HNSCADPRM →+0.492+0.184.004.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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