Cellular component assembly involved in morphogenesis

Across TCGA patient cohorts, RNA activity of the Cellular component assembly involved in morphogenesis pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SGCD, MAP1A, and PALLD, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cellular component assembly involved in morphogenesis activity versus SGCD in HNSC (Pearson r = 0.77).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	SGCD →	+0.976	+0.078	<.001	<.001	3	10
HNSC	MAP1A →	+0.608	+0.087	<.001	<.001	3	10
UCEC	PALLD →	+0.769	+0.055	<.001	<.001	3	10
UCEC	CSRP1 →	+1.114	+0.060	<.001	<.001	3	10
HNSC	FLNC →	+1.401	+0.080	<.001	<.001	3	10
HNSC	PDLIM3 →	+1.329	+0.079	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0010927 vs SGCD — HNSC

Explore this scatter interactively →