Regulation of isomerase activity

pathway activity — cross-omics
GO:0010911Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of isomerase activity pathway is significantly associated with the RNA expression of multiple genes, with the LGG cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LILRB4, FCGR2A, and VSIG4, each associated with the pathway in up to 30 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LGGLILRB4 →+1.376+0.070<.001<.001329
UCSFCGR2A →+1.360+0.078<.001<.001328
ACCVSIG4 →+1.721+0.053<.001<.001328
SCLCSLAMF8 →+1.397+0.118<.001.001328
SCLCITGB2 →+1.890+0.128<.001<.001130
LGGCYBB →+1.559+0.069<.001<.001328
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration