Regulation of synaptic vesicle priming

Across TCGA cell cohorts, RNA activity of the Regulation of synaptic vesicle priming pathway is significantly associated with the RNA expression of multiple genes, with the BLOOD_Leukemia cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PIGC, HOXB6, and SCAF4, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of synaptic vesicle priming activity versus PIGC in BLOOD_Leukemia (Pearson r = -0.72).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Leukemia	PIGC →	-0.408	-0.262	.002	<.001	3	3
LUNG_NSCLC_LUAD	HOXB6 →	+3.018	+1.714	<.001	<.001	3	3
LUNG_SCLC	SCAF4 →	+0.687	+0.161	.004	.007	3	3
LUNG_SCLC	ZNF221 →	+1.078	+0.245	.002	.003	3	3
STOMACH	VRK3 →	+0.667	+0.366	.007	.001	3	3
CNS	PSPC1 →	-1.037	-0.319	.009	.006	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0010807 vs PIGC — BLOOD_Leukemia

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