Programmed cell death involved in cell development

pathway activity — cross-omics
GO:0010623Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Programmed cell death involved in cell development pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CTNNA1, GIPC1, and ACTBL2, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCCTNNA1 →-0.244-0.058.003.00635
HNSCGIPC1 →-0.419-0.065<.001.00335
COADACTBL2 →+0.304+0.042<.001<.00134
COADF10 →+0.622+0.041.002.00134
BRCAHSPH1 →-0.439-0.044<.001<.00134
LSCCMRRF →-0.367-0.045<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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