Epidermal cell fate specification

pathway activity — cross-omics
GO:0009957Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Epidermal cell fate specification pathway is significantly associated with the protein abundance of multiple proteins, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are PRKAR2A, TLE5_S196, and WNK1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADPRKAR2A →+0.191+0.048<.001<.00135
GBMTLE5_S196 →+0.946+0.084<.001<.00134
GBMWNK1 →-0.225-0.080<.001<.00134
GBMEHBP1_S854 →-0.634-0.085<.001.00234
COADPTGES2 →+0.290+0.052<.001<.00134
OVTP53BP1_T1638 →-1.291-0.073.001.00634
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration