Epidermal cell fate specification

pathway activity — cross-omics
GO:0009957Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Epidermal cell fate specification pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are FUT8, PLCH1, and LHFPL2, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADFUT8 →+0.697+0.800.004.00333
HNSCPLCH1 →+0.866+0.397<.001.00732
HNSCLHFPL2 →+0.438+0.373.003.00432
HNSCKLKB1 →+0.500+0.393.001.00232
HNSCMIR613 →+1.004+0.542<.001<.00132
HNSCTRAJ61 →+0.504+0.369.009.00932
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration