Homoserine metabolic process

pathway activity — cross-omics
GO:0009092Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Homoserine metabolic process pathway is significantly associated with the protein abundance of multiple proteins, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CTH, TMX2, and MPST, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECCTH →+0.734+0.131<.001<.00139
GBMTMX2 →+0.427+0.068<.001<.00136
UCECMPST →+0.326+0.087.002.00336
GBMSULF1 →-0.688-0.061.001<.00135
CCRCCUBE4A →+0.135+0.057<.001<.00135
GBMC1S →-0.471-0.069<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration