Serine family amino acid metabolic process

pathway activity — cross-omics
GO:0009069Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Serine family amino acid metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MIOXP1, ZBTB44, and MYO1G, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCMIOXP1 →+0.200+0.091.003.00134
GBMZBTB44 →+0.371+0.178.003.00134
PDACMYO1G →-0.355-0.170.009<.00134
BRCAALDH6A1 →+0.644+0.117.002.00834
HNSCADHFE1 →+0.431+0.086<.001.00233
HNSCTDO2 →-0.872-0.137.004.00233
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration