Activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c

pathway activity — cross-omics
GO:0008635Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CAPN3, OR52B5P, and MAST4, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADCAPN3 →+0.667+0.209<.001.00135
LSCCOR52B5P →+0.330+0.170<.001<.00135
BRCAMAST4 →+0.741+0.168.004<.00134
LUADUBQLNL →+0.463+0.174<.001.00434
LSCCGATA3 →+0.706+0.121<.001.00234
BRCAPDE1A →+0.546+0.160.004<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration