Intrinsic apoptotic signaling pathway in response to osmotic stress

pathway activity — cross-omics
GO:0008627Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Intrinsic apoptotic signaling pathway in response to osmotic stress pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ARHGEF2, IMPA2, and HAPLN3, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECARHGEF2 →+0.459+0.187.005.00836
LSCCIMPA2 →-0.844-0.229.001<.00135
UCECHAPLN3 →+1.152+0.328.001<.00135
PDACHIF1A →+0.519+0.189<.001<.00134
COADVPS37A →+0.329+0.424.008.00534
GBMANLN →+0.794+0.324.001.00234
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration