Negative regulation of DNA replication

Across TCGA patient cohorts, RNA activity of the Negative regulation of DNA replication pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CENPO, DKK3, and EZH2, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of DNA replication activity versus CENPO in BRCA (Pearson r = 0.22).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	CENPO →	+0.385	+0.527	.003	.001	3	7
UCEC	DKK3 →	-0.916	-0.823	<.001	.001	3	7
UCEC	EZH2 →	+0.817	+0.862	.003	<.001	3	6
BRCA	TIMELESS →	+0.647	+0.553	<.001	.002	3	6
BRCA	TROAP →	+0.913	+0.566	<.001	.002	3	6
BRCA	FEZ1 →	-0.508	-0.665	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0008156 vs CENPO — BRCA

Explore this scatter interactively →