Protein targeting to lysosome

Across TCGA patient cohorts, RNA activity of the Protein targeting to lysosome pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are DKC1, TROAP, and H1-2, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Protein targeting to lysosome activity versus DKC1 in BRCA (Pearson r = -0.18).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	DKC1 →	-0.430	-0.166	.007	.001	3	5
LUAD	TROAP →	-0.619	-0.163	.005	<.001	3	5
GBM	H1-2 →	-0.532	-0.093	.004	<.001	3	5
LSCC	ALKBH2 →	-0.528	-0.120	<.001	.001	3	5
HNSC	UBE2C →	-0.831	-0.099	.002	.002	3	5
GBM	H2BC15 →	-0.637	-0.091	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0006622 vs DKC1 — BRCA

Explore this scatter interactively →