Cellular modified amino acid metabolic process

Across TCGA patient cohorts, RNA activity of the Cellular modified amino acid metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HYDIN2, RAB9B, and MACIR, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cellular modified amino acid metabolic process activity versus HYDIN2 in GBM (Pearson r = -0.08).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	HYDIN2 →	-0.640	-0.140	.005	.005	3	4
PDAC	RAB9B →	-0.442	-0.203	<.001	.001	3	4
GBM	MACIR →	-0.644	-0.155	.002	.009	3	4
COAD	INAVA →	-0.437	-0.107	.009	.005	3	3
COAD	ZEB2-AS1 →	+0.088	+0.146	<.001	<.001	3	3
GBM	SYT6 →	-0.841	-0.151	.004	.007	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0006575 vs HYDIN2 — GBM

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