mRNA export from nucleus

Across TCGA patient cohorts, RNA activity of the mRNA export from nucleus pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ZEB1, CPED1, and PRKG1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, mRNA export from nucleus activity versus ZEB1 in OV (Pearson r = -0.49).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	ZEB1 →	-1.406	-0.313	<.001	<.001	3	6
BRCA	CPED1 →	-0.929	-0.284	<.001	<.001	3	5
OV	PRKG1 →	-1.026	-0.294	<.001	<.001	3	5
UCEC	JAG1 →	-0.672	-0.285	.002	.002	3	5
CCRCC	CLEC1A →	-0.791	-0.233	.001	.001	3	5
OV	IGFBP7 →	-0.800	-0.169	.003	.004	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0006406 vs ZEB1 — OV

Explore this scatter interactively →