DNA-templated transcription initiation

pathway activity — cross-omics
GO:0006352Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the DNA-templated transcription initiation pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CICP5, PTGR2, and OR51Q1, each associated with the pathway in up to 2 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVCICP5 →+0.120+0.722.007.00932
COADPTGR2 →+0.184+0.861<.001<.00131
COADOR51Q1 →+0.034+1.246.006.00431
COADNEUROD2 →-0.012-0.748.001.00431
COADC19orf18 →+0.432+0.677.003.00831
COADSLC25A18 →+0.138+0.850.008.00831
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration