Obsolete regulation of gene expression by genomic imprinting

pathway activity — cross-omics
GO:0006349Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete regulation of gene expression by genomic imprinting pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CLEC5A, RBFA, and SP4, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVCLEC5A →-0.986-0.755.003<.00135
GBMRBFA →+0.277+0.493.003<.00134
GBMSP4 →+0.450+0.440.002.00534
UCECGNA15 →-0.736-0.789.008<.00125
LSCCRHBDL2 →-0.579-0.529<.001.00934
LSCCRN7SL3 →-0.816-0.731<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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