Fermentation

pathway activity — cross-omics
GO:0006113Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Fermentation pathway is significantly associated with the RNA expression of multiple genes, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TGFB1I1, TAGLN, and MYL9, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACTGFB1I1 →+0.318+0.169.005.00135
COADTAGLN →+0.909+0.536.001<.00135
BRCAMYL9 →+1.065+0.292<.001.00634
COADHCFC1R1 →+0.564+0.445.001.00734
BRCASYDE1 →+0.683+0.300<.001<.00134
COADST6GALNAC5 →+0.677+0.427.001.00334
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration