Fermentation

pathway activity — cross-omics
GO:0006113Cross-omicsPROTEIN-MS → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Fermentation pathway is significantly associated with the protein abundance of multiple proteins, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CAVIN3_S62, CHD8_S2519, and TP53, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACCAVIN3_S62 →+1.315+0.312<.001<.00125
PDACCHD8_S2519 →+0.742+0.287<.001<.00134
OVTP53 →+1.120+0.283<.001<.00134
OVSLC25A10 →-0.868-0.263.003<.00133
PDACACP1 →+0.277+0.158.002.00233
PDACC8G →+0.526+0.221<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration