Pancreatic A cell differentiation

pathway activity — cross-omics
GO:0003310Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Pancreatic A cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GTF2H3, IL2RG, and FAM13A-AS1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCGTF2H3 →+0.319+0.661.003.00834
BRCAIL2RG →-0.794-0.508<.001.00234
PDACFAM13A-AS1 →-0.261-0.381.001.00234
LUADMIR578 →+1.051+0.417.006.00533
OVFCGR3B →+1.125+0.837<.001<.00133
OVCXCL3 →+1.048+0.647.004.00733
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration