Negative regulation of adaptive immune response

Across TCGA cell cohorts, RNA activity of the Negative regulation of adaptive immune response pathway is significantly associated with the RNA expression of multiple genes, with the BLOOD_Lymphoma cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LGALS1, QSOX1, and EMP3, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of adaptive immune response activity versus LGALS1 in BLOOD_Lymphoma (Pearson r = 0.60).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Lymphoma	LGALS1 →	+5.080	+0.382	<.001	<.001	3	8
BREAST	QSOX1 →	+1.510	+0.298	.002	<.001	3	6
OESOPHAGUS	EMP3 →	+2.506	+0.224	<.001	.005	3	6
OESOPHAGUS	RECQL →	+1.501	+0.342	.002	<.001	3	5
BLOOD_Lymphoma	STX11 →	+3.287	+0.311	<.001	.001	3	5
LARGE_INTESTINE	TMEM141 →	-1.061	-0.276	.002	.002	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0002820 vs LGALS1 — BLOOD_Lymphoma

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