Cell surface pattern recognition receptor signaling pathway

Across TCGA patient cohorts, RNA activity of the Cell surface pattern recognition receptor signaling pathway pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PTAFR, THEMIS2, and GBP2, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cell surface pattern recognition receptor signaling pathway activity versus PTAFR in LSCC (Pearson r = 0.28).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	PTAFR →	+0.942	+0.662	<.001	<.001	3	7
LSCC	THEMIS2 →	+0.955	+0.576	<.001	<.001	3	6
GBM	GBP2 →	+0.865	+0.211	<.001	<.001	3	6
CCRCC	CCL4 →	+0.705	+0.240	<.001	.003	3	6
BRCA	GBP5 →	+1.098	+0.173	.005	.002	2	7
LSCC	FCER1G →	+0.890	+0.669	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0002752 vs PTAFR — LSCC

Explore this scatter interactively →