Negative regulation of chronic inflammatory response

pathway activity — cross-omics
GO:0002677Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Negative regulation of chronic inflammatory response pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TNFAIP3, RN7SL563P, and TIMM8BP2, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMTNFAIP3 →+1.081+0.714<.001<.00134
HNSCRN7SL563P →+0.517+0.228.008.00333
COADTIMM8BP2 →+0.544+0.204<.001.00433
GBMSUMO1P1 →+0.412+0.759<.001.00133
COADPITPNM1 →+0.479+0.198<.001<.00133
COADCCL5 →+0.939+0.170.007.00933
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration