Positive regulation of dendritic cell antigen processing and presentation

Across TCGA cell cohorts, RNA activity of the Positive regulation of dendritic cell antigen processing and presentation pathway is significantly associated with the shRNA dependency of multiple genes, with the LUNG_NSCLC_LUSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RCCD1, MN1, and LIPJ, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, RCCD1 grouped by Positive regulation of dendritic cell antigen processing and presentation-low versus -high activity in LUNG_NSCLC_LUSC.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUSC	RCCD1 →	-0.610	-1.752	.002	.003	3	4
LUNG_NSCLC_LUSC	MN1 →	+0.250	+1.781	.004	.009	3	4
LUNG_NSCLC_LUAD	LIPJ →	+0.147	+1.031	.003	.005	3	4
KIDNEY	ZNF599 →	-0.224	-0.890	.006	.006	2	4
BREAST	OSTM1 →	+0.240	+0.923	.001	.002	3	3
STOMACH	HS1BP3 →	-0.192	-1.269	.009	.003	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

RCCD1 by Positive regulation of dendritic cell antigen processing and presentation activity — LUNG_NSCLC_LUSC

Explore this box plot interactively →