T cell tolerance induction

pathway activity — cross-omics
GO:0002517Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the T cell tolerance induction pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are IL4I1, GZMH, and IDO1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCIL4I1 →+1.011+0.935<.001<.00136
OVGZMH →+1.177+1.141.002<.00136
OVIDO1 →+1.578+0.843.001<.00136
BRCATRIM22 →+0.999+0.696<.001<.00136
OVGBP4 →+1.029+0.550<.001.00836
BRCATAP1 →+0.996+0.567<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration