Immune response-regulating cell surface receptor signaling pathway involved in phagocytosis

pathway activity — cross-omics
GO:0002433Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Immune response-regulating cell surface receptor signaling pathway involved in phagocytosis pathway is significantly associated with the protein abundance of multiple proteins, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are ARRB2, SAMSN1_S23, and SKAP2, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCARRB2 →+0.410+0.097<.001<.001310
LSCCSAMSN1_S23 →+0.801+0.096<.001<.001310
GBMSKAP2 →+0.789+0.095<.001<.001310
GBMTNFAIP8L2 →+0.643+0.072<.001<.001310
UCECSAMSN1_S107 →+0.838+0.094<.001<.001310
HNSCTBXAS1 →+0.568+0.076<.001.002310
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration