"CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation"

pathway activity — cross-omics
GO:0002361Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the "CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" pathway is significantly associated with the RNA expression of multiple genes, with the UCS cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LGALS9, IL2RG, and NCF4, each associated with the pathway in up to 29 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCSLGALS9 →+1.633+0.064.001<.001229
SKCMIL2RG →+2.599+0.088<.001<.001326
SKCMNCF4 →+1.526+0.082<.001<.001324
SKCMTNFAIP8L2 →+1.595+0.084<.001<.001324
SKCMCD74 →+2.253+0.083<.001<.001324
SKCMPCED1B-AS1 →+1.765+0.084<.001<.001324
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration