B cell lineage commitment

pathway activity — cross-omics
GO:0002326Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the B cell lineage commitment pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are ESRP2, EVL_S246, and HOOK1, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCESRP2 →-0.557-0.118<.001<.00137
LSCCEVL_S246 →+0.697+0.086<.001<.00137
HNSCHOOK1 →-0.326-0.084<.001<.00137
BRCAPREX1 →+0.634+0.074<.001<.00137
LUADRASSF2_S145 →+0.719+0.078<.001<.00136
HNSCSH2D1A →+0.769+0.091<.001.00236
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration