lncRNA-mediated post-transcriptional gene silencing

pathway activity — cross-omics
GO:0000512Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the lncRNA-mediated post-transcriptional gene silencing pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MTFR2, HEXA-AS1, and NEGR1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECMTFR2 →+0.774+0.298.001.00236
CCRCCHEXA-AS1 →+0.263+0.189.001.00135
GBMNEGR1 →-1.081-0.660.001.00135
BRCAFAM72A →+0.673+0.219<.001<.00135
COADPRELID3B →+0.784+0.653<.001.00134
BRCAMEGF9 →-1.176-0.265<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration