WHAMM

Across TCGA pan-cancer cohorts, WHAMM mass-spec protein differs between tumor and matched normal tissue in 2 of 18 cancer types tested, making tumor–normal expression one of WHAMM’s most consistent transcriptional readouts.

The strongest signal is observed in head and neck squamous cell carcinoma (HNSC), where WHAMM mass-spec protein is repressed in tumor relative to normal tissue. In most cancer types WHAMM is over-expressed in tumor, although a few such as HNSC show the opposite, repressed pattern.

HNSC and CCRCC are the cancer types where WHAMM tumor–normal differential expression is most reproducible.

mass-spec protein tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in WHAMM mass-spec protein (log₂); positive values indicate higher expression in tumor. p-values are from the differential-expression test.

Lineage	Gender	Stage	Fold-change	p	Sampling consensus
HNSC	All	All	−0.402	<.001	5	view →
CCRCC	All	II,III,IV	+0.557	.003	4	view →

Pink = over-expressed in tumor, green = repressed in tumor. Showing the 2 strongest of 2 lineages.

WHAMM–HNSC

Open the HNSC breakdown →