VTRNA1-3

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, VTRNA1-3 RNA expression is significantly associated with the protein abundance of many other proteins, with 11,688 significant associations in total. CCRCC shows the largest number of these associations.

The most reproducible VTRNA1-3-associated proteins across cancer lineages are RFC1_S156, PSMF1_S252, and MYO9B_S1405. Each is linked with VTRNA1-3 in more than 5 cancer types. Because this analysis shows association rather than direction, both VTRNA1-3-to-partner and partner-to-VTRNA1-3 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (VTRNA1-3→partner) and Y-score (partner→VTRNA1-3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCRFC1_S156 →+0.710+1.256<.001<.00136
LSCCPSMF1_S252 →+0.913+1.851<.001<.00136
CCRCCMYO9B_S1405 →+0.692+2.294<.001<.00136
CCRCCARHGAP25_S363 →+0.739+2.957<.001<.00136
LSCCTCOF1_S1257 →+0.847+1.797<.001<.00136
CCRCCTOP1_S112 →+0.736+2.185<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest of 11,688 associations by consensus.

Exploration