VPS35

Across TCGA pan-cancer cohorts, VPS35 mass-spec protein differs between tumor and matched normal tissue in 4 of 18 cancer types tested, making tumor–normal expression one of VPS35’s most consistent transcriptional readouts.

The strongest signal is observed in clear cell renal cell carcinoma (CCRCC), where VPS35 mass-spec protein is repressed in tumor relative to normal tissue. In most cancer types VPS35 is over-expressed in tumor, although a few such as CCRCC and LSCC show the opposite, repressed pattern.

CCRCC, PDAC, and LSCC are the cancer types where VPS35 tumor–normal differential expression is most reproducible.

mass-spec protein tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in VPS35 mass-spec protein (log₂); positive values indicate higher expression in tumor. p-values are from the differential-expression test.

Lineage	Gender	Stage	Fold-change	p	Sampling consensus
CCRCC	Male	All	−0.284	<.001	11	view →
PDAC	Male	All	+0.401	<.001	9	view →
LSCC	All	II,III,IV	−0.206	<.001	8	view →
COAD	Male	All	−0.078	.012	2	view →

Pink = over-expressed in tumor, green = repressed in tumor. Showing the 4 strongest of 4 lineages.

VPS35–CCRCC

Open the CCRCC breakdown →