VGF

Across TCGA cell cohorts, VGF RNA expression is significantly associated with the RNA expression of many other genes, with 4,828 significant associations in total. SOFT_TISSUE shows the largest number of these associations.

The most reproducible VGF-associated genes across cancer lineages are AP1S1, NAT16, and UNC13A. Each is linked with VGF in more than 9 cancer types. Because this analysis shows association rather than direction, both VGF-to-partner and partner-to-VGF results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, VGF versus AP1S1 in LUNG_NSCLC_LUSC, with a Pearson correlation of 0.34.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (VGF→partner) and Y-score (partner→VGF) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUSC	AP1S1 →	+1.116	+1.498	<.001	.001	2	10
LUNG_SCLC	NAT16 →	+1.633	+3.309	<.001	<.001	3	7
SOFT_TISSUE	UNC13A →	+2.100	+2.837	<.001	<.001	3	5
SOFT_TISSUE	KREMEN2 →	+2.425	+2.822	<.001	<.001	2	6
SKIN	SPRY4 →	+1.932	+2.610	<.001	.003	3	5
SOFT_TISSUE	SHANK3 →	+0.865	+2.246	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,828 associations by consensus.

VGF vs AP1S1 — LUNG_NSCLC_LUSC

Explore this scatter interactively →