USP29

Across TCGA cell cohorts, USP29 RNA expression is significantly associated with the mutation status of many other genes, with 229 significant associations in total. LUNG_NSCLC_LUAD shows the largest number of these associations.

The most reproducible USP29-associated genes across cancer lineages are ARFGEF2, TMCO4, and TRPM4. Each is linked with USP29 in more than 2 cancer types. Because this analysis shows association rather than direction, both USP29-to-partner and partner-to-USP29 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, ARFGEF2 grouped by USP29-low versus USP29-high in URINARY_TRACT.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (USP29→partner) and Y-score (partner→USP29) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
URINARY_TRACT	ARFGEF2 →	+4.087	+0.025	.009	<.001	3	3
LARGE_INTESTINE	TMCO4 →	+4.415	+0.009	.007	<.001	3	3
LUNG_NSCLC_LUAD	TRPM4 →	+4.078	+0.009	.009	<.001	3	3
URINARY_TRACT	CTNND2 →	+4.087	+0.025	.009	<.001	3	2
STOMACH	KIF21B →	+4.044	+0.029	.003	<.001	3	2
STOMACH	NBAS →	+3.044	+0.031	.008	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 229 associations by consensus.

ARFGEF2 by USP29 expression — URINARY_TRACT

Explore this box plot interactively →