Across TCGA patient cohorts, TRIM39 mutation is significantly associated with the RNA expression of many other genes, with 1,545 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible TRIM39-associated genes across cancer lineages are PHF5A, CEACAMP11, and LINC01871. Each is linked with TRIM39 in more than 2 cancer types. Because this analysis shows association rather than direction, both TRIM39-to-partner and partner-to-TRIM39 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (TRIM39→partner) and Y-score (partner→TRIM39) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	PHF5A →	+0.442	+2.502	.003	.002	3	3
COAD	CEACAMP11 →	+0.047	+2.823	.007	.004	3	3
UCEC	LINC01871 →	+0.919	+3.601	.004	.001	3	3
COAD	WDR41 →	+0.435	+3.424	.001	.004	3	3
HNSC	RNU6-17P →	+0.145	+4.023	<.001	.009	3	2
CESC	BSNDP1 →	+0.074	+4.559	<.001	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,545 associations by consensus.

Exploration

TRIM39 survival (RNA) · tumor vs normal (RNA) · all TRIM39 data types