TRAV28

Across TCGA patient cohorts, TRAV28 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,375 significant associations in total. STAD shows the largest number of these associations.

The most reproducible TRAV28-associated GO terms across cancer lineages are Negative regulation of RNA splicing, Glycerolipid biosynthetic process, and Vacuolar transport. Each is linked with TRAV28 in more than 15 cancer types. Because this analysis shows association rather than direction, both TRAV28-to-partner and partner-to-TRAV28 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Negative regulation of RNA splicing grouped by TRAV28-low versus TRAV28-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (TRAV28→partner) and Y-score (partner→TRAV28) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Negative regulation of RNA splicing →	+0.082	+0.082	<.001	<.001	3	16
DLBC	Glycerolipid biosynthetic process →	+0.076	+0.356	<.001	.004	1	16
STAD	Vacuolar transport →	+0.078	+0.161	<.001	<.001	3	14
STAD	Phospholipid biosynthetic process →	+0.071	+0.185	<.001	<.001	3	14
STAD	Autophagosome maturation →	+0.071	+0.166	<.001	<.001	3	14
STAD	Protein-RNA complex organization →	+0.080	+0.082	<.001	<.001	3	14

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,375 associations by consensus.

Negative regulation of RNA splicing by TRAV28 expression — STAD

Explore this box plot interactively →