Across TCGA patient cohorts, TRAV17 mutation is significantly associated with the RNA expression of many other genes, with 81 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible TRAV17-associated genes across cancer lineages are OR52J3, TOMM20P3, and RNA5SP414. Each is linked with TRAV17 in more than 1 cancer types. Because this analysis shows association rather than direction, both TRAV17-to-partner and partner-to-TRAV17 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (TRAV17→partner) and Y-score (partner→TRAV17) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	OR52J3 →	+0.045	+5.444	<.001	.002	3	2
LUAD	TOMM20P3 →	+0.270	+5.285	<.001	.001	3	2
UCEC	RNA5SP414 →	+1.164	+3.670	<.001	.002	3	1
UCEC	RNA5SP411 →	+2.848	+4.978	<.001	<.001	3	1
UCEC	RNA5SP412 →	+1.202	+3.382	<.001	.004	3	1
HNSC	RNU6-1244P →	+0.347	+7.954	<.001	.008	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 81 associations by consensus.

Exploration

TRAV17 survival (RNA) · tumor vs normal (RNA) · all TRAV17 data types