TM9SF3

Across TCGA cell cohorts, TM9SF3 RNA expression is significantly associated with the go_rna of many other GO terms, with 3,973 significant associations in total. SKIN shows the largest number of these associations.

The most reproducible TM9SF3-associated GO terms across cancer lineages are Golgi vesicle transport, Post-Golgi vesicle-mediated transport, and Regulation of post-transcriptional gene silencing by regulatory ncRNA. Each is linked with TM9SF3 in more than 13 cancer types. Because this analysis shows association rather than direction, both TM9SF3-to-partner and partner-to-TM9SF3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Golgi vesicle transport grouped by TM9SF3-low versus TM9SF3-high in LUNG_SCLC.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (TM9SF3→partner) and Y-score (partner→TM9SF3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_SCLC	Golgi vesicle transport →	+0.069	+0.936	.001	<.001	3	14
OESOPHAGUS	Post-Golgi vesicle-mediated transport →	+0.080	+0.706	.002	.005	3	13
SKIN	Regulation of post-transcriptional gene silencing by regulatory ncRNA →	+0.087	+0.599	<.001	<.001	3	12
SKIN	Regulation of miRNA-mediated gene silencing →	+0.087	+0.599	<.001	<.001	3	12
LUNG_SCLC	Golgi organization →	+0.060	+0.681	<.001	.003	3	12
BONE	Retrograde transport, endosome to Golgi →	+0.075	+0.705	.006	.003	3	12

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,973 associations by consensus.

Golgi vesicle transport by TM9SF3 expression — LUNG_SCLC

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