STS

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, STS mutation is significantly associated with the RNA expression of many other genes, with 3,433 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible STS-associated genes across cancer lineages are OIP5, RNU6-1126P, and C18orf32. Each is linked with STS in more than 2 cancer types. Because this analysis shows association rather than direction, both STS-to-partner and partner-to-STS results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, OIP5 grouped by STS-low versus STS-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (STS→partner) and Y-score (partner→STS) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECOIP5 →+0.739+1.938<.001<.00133
LUADRNU6-1126P →+0.306+4.859<.001.00433
UCECC18orf32 →+0.356+1.754<.001<.00133
UCECTIMM21 →+0.415+1.928<.001<.00133
UCECRPL17P50 →+0.487+1.938<.001<.00133
UCECTCERG1L-AS1 →+0.211+1.709<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,433 associations by consensus.

OIP5 by STS expression — UCEC

Box plot of OIP5 in STS-low vs STS-high samples in UCEC.

Explore this box plot interactively →

Exploration