SPRED2

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SPRED2 mutation is significantly associated with the RNA expression of many other genes, with 2,581 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible SPRED2-associated genes across cancer lineages are LHX6, AKR1A1, and TSPY26P. Each is linked with SPRED2 in more than 2 cancer types. Because this analysis shows association rather than direction, both SPRED2-to-partner and partner-to-SPRED2 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SPRED2→partner) and Y-score (partner→SPRED2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECLHX6 →-0.286-1.957.007.00933
UCECAKR1A1 →+0.271+2.024.006.00533
UCECTSPY26P →-0.569-1.777.005.00233
UCECSFXN1 →+0.423+2.736<.001<.00133
UCECGHITM →+0.570+2.717<.001<.00133
UCECMRPL16 →+0.256+1.856.009.00433
Each partner links to its Q-omics profile. Showing the 6 strongest of 2,581 associations by consensus.

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