SP4

Across TCGA patient cohorts, SP4 mutation is significantly associated with the RNA expression of many other genes, with 5,430 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible SP4-associated genes across cancer lineages are TRAJ12, PSMD12P1, and RN7SL134P. Each is linked with SP4 in more than 3 cancer types. Because this analysis shows association rather than direction, both SP4-to-partner and partner-to-SP4 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, TRAJ12 grouped by SP4-low versus SP4-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SP4→partner) and Y-score (partner→SP4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	TRAJ12 →	+0.357	+1.259	<.001	.008	3	4
UCEC	PSMD12P1 →	+0.078	+1.429	.007	.001	3	3
UCEC	RN7SL134P →	+0.076	+1.811	.001	<.001	3	3
SKCM	NPLP1 →	+0.147	+3.243	<.001	.009	3	3
LIHC	PRSS3P3 →	+0.073	+5.544	<.001	.004	3	2
LIHC	RN7SL198P →	+0.170	+5.186	<.001	.007	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,430 associations by consensus.

TRAJ12 by SP4 expression — UCEC

Explore this box plot interactively →